USC-OGP 2-DE database Two-dimensional polyacrylamide gel electrophoresis database

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Searching in 'USC-OGP 2-DE database' for entry matching: HNRPQ_HUMAN USC-OGP 2-DE database:  HNRPQ_HUMAN HNRPQ_HUMAN General information about the entry View entry in simple text format Entry name HNRPQ_HUMAN Primary accession number O60506 integrated into USC-OGP 2-DE database on  January 17, 2017 (release 1) 2D Annotations were last modified on January 17, 2017 (version 1) General Annotations were last modified on  April 5, 2017 (version 2) Name and origin of the protein Description RecName: Full=Heterogeneous nuclear ribonucleoprotein Q; Short=hnRNP Q; AltName: Full=Glycine-and tyrosine-rich RNA-binding protein; Short=GRY-RBP; AltName: Full=NS1-associated protein 1; AltName: Full=Synaptotagmin-binding, cytoplasmic RNA-interacting protein;. Gene name Name=SYNCRIP Synonyms=HNRPQ, NSAP1 Annotated species Homo sapiens (Human) [TaxID: 9606] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. References [1]   2D GEL CHARACTERIZATION Author 1., Author 2. Submitted (Mar-2011) to Current 2D PAGE maps for identified proteins How to interpret a protein UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10} Homo sapiens (Human)   map experimental info   UVEAL_MELANOMA_3-10 MAP LOCATIONS: SPOT OGP-1127: pI=5.58; Mw=72168 Cross-references UniProtKB/Swiss-Prot O60506; HNRPQ_HUMAN. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 0.0 Entry name HNRPQ_HUMAN Primary accession number O60506 Secondary accession number(s) E1P501 E1P502 Q53H05 Q5TCG2 Q5TCG3 Q8IW78 Q8N599 Q96LC1 Q96LC2 Q9Y583 Sequence was last modified on  March 7, 2006 (version 2) Annotations were last modified on  March 15, 2017 (version 169) Name and origin of the protein Description RecName: Full=Heterogeneous nuclear ribonucleoprotein Q; Short=hnRNP Q; AltName: Full=Glycine-and tyrosine-rich RNA-binding protein; Short=GRY-RBP; AltName: Full=NS1-associated protein 1; AltName: Full=Synaptotagmin-binding, cytoplasmic RNA-interacting protein; Gene name Name=SYNCRIP Synonyms=HNRPQ, NSAP1 Encoded on Name=SYNCRIP; Synonyms=HNRPQ, NSAP1 Keywords 3D-structure; Acetylation; Alternative splicing; Complete proteome; Cytoplasm; Direct protein sequencing; Endoplasmic reticulum; Host-virus interaction; Methylation; Microsome; mRNA processing; mRNA splicing; Nucleus; Phosphoprotein; Reference proteome; Repeat; Ribonucleoprotein; RNA-binding; Spliceosome; Translation regulation. Copyright Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL AF155568; AAD38198.1; -; mRNA EMBL AF037448; AAC12926.1; -; mRNA EMBL AY034481; AAK59703.1; -; mRNA EMBL AY034482; AAK59704.1; -; mRNA EMBL AY034483; AAK59705.1; -; mRNA EMBL AK222776; BAD96496.1; -; mRNA EMBL AL136082; CAI20446.1; -; Genomic_DNA EMBL AL136082; CAI20447.1; -; Genomic_DNA EMBL CH471051; EAW48625.1; -; Genomic_DNA EMBL CH471051; EAW48626.1; -; Genomic_DNA EMBL CH471051; EAW48629.1; -; Genomic_DNA EMBL CH471051; EAW48630.1; -; Genomic_DNA EMBL BC015575; AAH15575.1; ALT_SEQ; mRNA EMBL BC032643; AAH32643.1; -; mRNA EMBL BC040844; AAH40844.1; -; mRNA CCDS CCDS5005.1; -. [O60506-1]; . CCDS CCDS55041.1; -. [O60506-3]; . RefSeq NP_001153145.1; NM_001159673.1; . RefSeq NP_001153146.1; NM_001159674.1. [O60506-4]; . RefSeq NP_001153147.1; NM_001159675.1. [O60506-2]; . RefSeq NP_001153148.1; NM_001159676.1; . RefSeq NP_001153149.1; NM_001159677.1. [O60506-3]; . RefSeq NP_001240700.1; NM_001253771.1. [O60506-5]; . RefSeq NP_006363.4; NM_006372.4. [O60506-1]; . RefSeq XP_005248694.1; XM_005248637.2. [O60506-1]; . RefSeq XP_016865667.1; XM_017010178.1. [O60506-3]; . UniGene Hs.571177; -; . PDB 2DGU; NMR; -; A=334-423 PDB 2MXT; NMR; -; A=24-107 PDB 2NBB; NMR; -; A=24-140 PDBsum 2DGU; -; . PDBsum 2MXT; -; . PDBsum 2NBB; -; . ProteinModelPortal O60506; -; . SMR O60506; -; . BioGrid 115755; 303; . DIP DIP-35540N; -; . IntAct O60506; 157; . MINT MINT-2796763; -; . STRING 9606.ENSP00000358635; -; . iPTMnet O60506; -; . PhosphoSitePlus O60506; -; . SwissPalm O60506; -; . BioMuta SYNCRIP; -; . EPD O60506; -; . MaxQB O60506; -; . PaxDb O60506; -; . PeptideAtlas O60506; -; . PRIDE O60506; -; . DNASU 10492; -; . Ensembl ENST00000355238; ENSP00000347380; ENSG00000135316. [O60506-3]; . Ensembl ENST00000369622; ENSP00000358635; ENSG00000135316. [O60506-1]; . GeneID 10492; -; . KEGG hsa:10492; -; . UCSC uc003pkv.4; human. [O60506-1]; . CTD 10492; -; . DisGeNET 10492; -; . GeneCards SYNCRIP; -; . HGNC HGNC:16918; SYNCRIP; . HPA CAB010895; -; . HPA HPA041275; -; . neXtProt NX_O60506; -; . OpenTargets ENSG00000135316; -; . PharmGKB PA134985065; -; . eggNOG KOG0117; Eukaryota; . eggNOG ENOG410XTJ5; LUCA; . GeneTree ENSGT00550000074366; -; . HOVERGEN HBG051917; -; . InParanoid O60506; -; . KO K13160; -; . OMA MATDHVN; -; . OrthoDB EOG091G0EUB; -; . PhylomeDB O60506; -; . TreeFam TF314932; -; . SIGNOR O60506; -; . ChiTaRS SYNCRIP; human; . EvolutionaryTrace O60506; -; . GeneWiki SYNCRIP; -; . GenomeRNAi 10492; -; . PRO PR:O60506; -; . Proteomes UP000005640; Chromosome 6; . Bgee ENSG00000135316; -; . CleanEx HS_SYNCRIP; -; . ExpressionAtlas O60506; baseline and differential; . Genevisible O60506; HS; . GO GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB; . GO GO:0070937; C:CRD-mediated mRNA stability complex; IDA:UniProtKB; . GO GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell; . GO GO:0097452; C:GAIT complex; IDA:UniProtKB; . GO GO:0071204; C:histone pre-mRNA 3'end processing complex; ISS:UniProtKB; . GO GO:0030529; C:intracellular ribonucleoprotein complex; IDA:UniProtKB; . GO GO:0016020; C:membrane; IDA:UniProtKB; . GO GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell; . GO GO:0005634; C:nucleus; TAS:ProtInc; . GO GO:0000166; F:nucleotide binding; IEA:InterPro; . GO GO:0008143; F:poly(A) binding; IEA:Ensembl; . GO GO:0003723; F:RNA binding; IDA:UniProtKB; . GO GO:0071346; P:cellular response to interferon-gamma; IDA:UniProtKB; . GO GO:0070934; P:CRD-mediated mRNA stabilization; IMP:UniProtKB; . GO GO:0000398; P:mRNA splicing; via spliceosome; IC:UniProtKB GO GO:0017148; P:negative regulation of translation; IDA:UniProtKB; . GO GO:0001649; P:osteoblast differentiation; IDA:UniProtKB; . GO GO:0006396; P:RNA processing; TAS:ProtInc; . GO GO:0008380; P:RNA splicing; TAS:ProtInc; . GO GO:0016032; P:viral process; IEA:UniProtKB-KW; . Gene3D 3.30.70.330; -; 2; . InterPro IPR006535; HnRNP_R/Q_splicing_fac; . InterPro IPR012677; Nucleotide-bd_a/b_plait; . InterPro IPR000504; RRM_dom; . Pfam PF00076; RRM_1; 3; . SMART SM00360; RRM; 3; . SUPFAM SSF54928; SSF54928; 3; . TIGRFAMs TIGR01648; hnRNP-R-Q; 1; . PROSITE PS50102; RRM; 3; .

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